Rui Zhang

This study reconstructs 3D spatial transcriptomic models of planarians to map cell type distribution and positional gene regulation, identifying candidate genes involved in regeneration.

This paper presents the first chromosome-level genome of the Bicolor Angelfish, providing insights into coral reef fish evolution and conservation.

The paper analyzes 630 aquatic vertebrate genomes to create a compendium, revealing TE diversity and gene family evolution related to the water-to-land transition.

TGS-GapCloser closes gaps in genome assemblies using error-prone long reads, improving contig N50 and gene completeness while being faster than existing tools.

The paper resolves the sex-determination system in Ginkgo biloba, identifying XY chromosomes and five potential sex-determination genes originating ~14 million years ago.