bioRxivBiophysics
The Organization of Membranes Below 100 nm: Experimental Breakthroughs Occasion a Modeling Manifesto
Abstract
New experimental techniques reveal the plasma membrane to be heterogeneous and \"scale-rich,\" from nanometers to microns, and from microseconds to seconds. This is critical information, as heterogeneous, scale-dependent transport governs the molecular encounters that underlie cellular signaling. The data are rich, and reaffirm the importance of the cortical cytoskeleton, protein aggregates, and lipidomic complexity to the statistics of molecular encounters. Moreover, the data demand simulation approaches with a particular set of features, hence the \"manifesto\". Together with the experimental data, simulations which satisfy these requirements hold the promise of a deeper understanding of membrane spatiotemporal organization. Several experimental breakthroughs are reviewed, the constraints that they place on simulations are discussed, and the status of simulation approaches which aim to meet them are detailed.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Large-scale simulation of biomembranes: bringing realistic kinetics to coarse-grained models
M. Sadeghi, F. Noe·bioRxiv·Oct 22, 2019
- Impact of nanoscale hindrances on the relationship between lipid packing and diffusion in model membranes
D. Beckers, D. Urbancic, E. Sezgin·bioRxiv·Jan 16, 2020
- Using Packing Defects in Heterogeneous Biological Membrane as a Lens to Explore Protein Localization Propensity and Small Molecule Permeability
M. Tripathy, A. Srivastava·bioRxiv·Sep 20, 2022
- Lipid-protein interactions are unique fingerprints for membrane proteins
V. Corradi, E. Mendez-Villuendas, … D. P. Tieleman·bioRxiv·Sep 20, 2017
- An agent-based model of molecular aggregation at the cell membrane
Juliette Griffié, Ruby Peters, Dylan M. Owen·PLoS ONEPeer-reviewed·Feb 7, 2020
- Multi-body Fluctuation-Induced Forces Between Membrane Proteins: Insights from Mesoscale Simulations
Adrià Bravo Vidal, Weria Pezeshkian·Biophysical JournalPeer-reviewed·Jul 15, 2026