bioRxivMolecular BiologyPreprint
Evidence for transposable element control by Argonautes in a parasitic flatworm lacking the piRNA pathway.
Anna Victoria ProtasioiD, Kate A. RawlinsoniD, Eric Alexander MiskaiD, Matthew BerrimaniD, Gabriel RinaldiiD
Abstract
Transposable elements (TEs) are mobile parts of the genome that can jump or self-replicate, posing a threat to the stability and integrity of the host genome. TEs are prevented from causing damage to the host genome by defense mechanisms such as nuclear silencing, where TE transcripts are targeted for degradation in an RNAi-like fashion. These pathways are well characterised in model organisms but very little is known about them in other species. Parasitic flatworms present an opportunity to investigate evolutionary novelties in TE control because they lack canonical pathways identified in model organisms (such as the piRNA pathways) but have conserved central players such as Dicer and Ago (argonaute) enzymes. Notably, parasitic flatworm Ago proteins are phylogenetically distinct from classical Ago, raising the question of whether they play special roles in these organisms. In this report, we investigate the role of Ago proteins in the parasitic flatworm Schistosoma mansoni. We show that transcript abundance of two retrotransposable elements increases upon silencing of S. mansoni Ago genes. We further demonstrate that SmAgo2 protein is primarily localised in the germ line of adult worms and its sub-cellular localisation is both nuclear and cytoplasmic. These findings provide further evidence of active TE control under a yet not fully unveiled pathway.
- assay: bulk RNA-seq
- assay: proteomics
- research focus: differential expression
- research focus: protein structure prediction
- research focus: cell type annotation
- research focus: gene regulatory network inference
- approach: statistical model
- approach: experimental assay
- Citations
- 1
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