bioRxivMicrobiologyPreprint
Does Fermentation Enhance Beverage Safety? Kombucha's Resistance to Microbial Invasion Suggests a Protective Role
Gissel Marquez Alcaraz, Shrinath NarayananiD, Joe AlcockiD, Jessica D. Ayers, Cristina BaciuiD, Hanna L. BermaniD, Robert R. DunniD, Angelo FortunatoiD, Alexander MayiD, Carlo C. MaleyiD, Jessica Siegel, Bryan Yavari, Athena AktipisiD
Abstract
Does fermentation enhance the safety of beverages? This study investigates kombuchas resilience to microbial invasion from human hands. Kombucha, an ancient fermented tea, relies on a biofilm known as a symbiotic community of bacteria and yeast (SCOBY) and a starter culture to ferment sweet tea, producing various metabolites including gluconic acid, acetic acid, ethanol, and carbon dioxide. While fermented foods have been historically associated with potential health benefits, direct evidence comparing the prevalence of human pathogens in fermented versus non-fermented beverages has been lacking. To address this, we conducted a citizen science experiment at Arizona State University, introducing swabs from peoples palms into both kombucha and a sweet tea control. Over 30 days, we monitored the bacterial and fungal composition using 16S and ITS rRNA sequencing. Our findings reveal that kombucha maintained a relatively stable microbial profile and physical appearance, with a typical SCOBY biofilm developing. In stark contrast, the sweet tea experienced a dramatic change in microbial composition and was visibly compromised by rapidly growing microorganisms. Importantly, this suggests that the complex microbial ecosystem of kombucha can limit the growth of foreign microbes introduced from human hands. Given that human pathogens were absent from the kombucha while present in the tea samples, our results indicate that the antimicrobial properties of fermentation byproducts and the physical barrier of the SCOBY may contribute to this resilience. Further research is warranted to fully elucidate the mechanisms underlying kombuchas resistance to microbial invasion.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Possible origins of kombucha in spontaneous fermentation
Caroline Isabel Kothe, Kim Wejendorp, … Joshua D. Evans·bioRxiv·Jul 17, 2025
- Kombucha as a model system for multispecies microbial cooperation: theoretical promise, methodological challenges and new solutions ‘in solution’
Alexander Niall May, James Medina, … Athena Aktipis·bioRxiv·Nov 5, 2017
- Ecological factors that drive microbial communities in culturally diverse fermented foods
Arya Gautam, Rahgavi Poopalarajah, … Aashish R. Jha·BMC MicrobiologyPeer-reviewed·Oct 15, 2025
- High prevalence of antibiotic resistance in traditionally fermented foods as a critical risk factor for host gut antibiotic resistome
- Modulation of gut microbiota through in vitro exposure to a traditional fermented food in the context of pathogen invasion
Murambiwa Nyati, Oscar van Mastrigt, … Sijmen E. Schoustra·bioRxiv·Mar 25, 2025
- The microbial composition and functional roles of different kombucha products in Singapore
S. L. Hooi, J. Dwiyanto, … J. Lim·bioRxiv·Nov 14, 2022