An AI-powered cloud biofoundry for autonomous biological research
Junyu Chen, Michael J. Volk, Saman Shafaei, Shih‐I TaniD, Vikas UpadhyayiD, Nilmani SinghiD, Xianrui Zhong, Katherine ArnesoniD, Wenqi He, Chen Wang, Jingxia LuiD, Aurosish Sharma, John McLaughlin, Matthew Berry, Steven Harmon, Sophia ReyesiD, George Heintz, Huimin ZhaoiD
Abstract
Autonomous experimentation, where an automated system designs, performs, analyzes, and iteratively improves experiments with minimal human intervention represents a transformative scientific research paradigm. However, it remains hampered by the disconnect between computational design and experimental execution. Here we present iCloudBiofoundry, a cloud-accessible, scalable, and self-evolving platform that bridges this divide. A scientific multi-agent system, iBioGenie, plans research workflows by converting natural language research objectives into testable hypotheses and experimentally grounded protocols using literature, databases, and computational tools. A physical AI layer, BiofoundryAI, translates them into executable workflows that run autonomously on distributed robotic biofoundries, and collects the data for iterative design. We demonstrate the end-to-end capabilities of iCloudBiofoundry across three representative case studies spanning enzyme retrieval, protein engineering, and metabolic engineering. By integrating agentic AI with physical AI, iCloudBiofoundry provides a cloud accessible platform that unifies computational design and robotic execution, enabling autonomous biological research.
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