bioRxivNeurosciencePreprint
Dimensional clinical phenotyping using post-mortem brain donor medical records: Association with neuropathology
Jonathan S. VogelgsangiD, Shu DaniD, Anna P. Lally, Michael Chatigny, Sangeetha Vempati, Joshua Abston, Peter T. DurningiD, Derek H. OakleyiD, Thomas H. McCoyiD, Torsten KlengeliD, Sabina BerrettaiD
Abstract
INTRODUCTIONTransdiagnostic dimensional phenotypes are essential to investigate the relationship between continuous symptom dimensions and pathological changes. This is a fundamental challenge to postmortem work, as assessment of newly developed phenotypic concepts needs to rely on existing records. METHODSWe adapted well-validated methodologies to compute NIMH research domain criteria (RDoC) scores using natural language processing (NLP) from electronic health records (EHRs) obtained from post-mortem brain donors and tested whether RDoC cognitive domain scores were associated with hallmark Alzheimers disease (AD) neuropathological measures. RESULTSOur results confirm an association of EHR-derived cognitive scores with hallmark neuropathological findings. Notably, higher neuropathological load, particularly neuritic plaques, was associated with higher cognitive burden scores in the frontal ({beta}=0.38, p=0.0004), parietal ({beta}=0.35, p=0.0008), temporal ({beta}=0.37, p=0. 0004) and occipital ({beta}=0.37, p=0.0003) lobes. DISCUSSIONThis proof of concept study supports the validity of NLP-based methodologies to obtain quantitative measures of RDoC clinical domains from postmortem EHR.
- organism: human
- assay: electronic health records
- research focus: dimensionality reduction
- approach: statistical model
- Citations
- 2
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