TickMotion: A user-friendly tool to measure and visualize muscle contractions and movements in insect and other arthropod tissues.
Abstract
TickMotion is a Python-based software tool designed for the post hoc analysis of video recordings that capture movements or muscle contractions in insects. It provides a simple, fast, and automated approach for semi-quantitative assessment of motion by measuring the "pixel activity" - changes in pixel intensity or color caused by movement. Unlike many existing approaches, it does not require specialized equipment, chemical reagents, or expensive software. In this context, clusters of pixels represent biological structures such as tissues or entire organisms, with their activity reflecting dynamic changes during the recording. The application can distinguish active pixels from inactive ones within selected regions of interest (ROIs) and measure their intensity over a pre-set time. It offers two distinct analyses: Graphical Analysis (GA), and Pixel Activity Analysis (PAA), both customizable to accommodate various experiments. GA generates a graphical illustration of pixel activity (in selected ROIs) over time together with numerical data from the measurement. PAA produces PNG images highlighting the active regions (clusters of pixels) in the video. Initially designed to analyze muscle contractions in tick tissues, TickMotion is useful for applications extending to any movement analysis. It serves as a simple but valuable tool across diverse research areas.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- FlyLimbTracker: an active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila
Virginie Uhlmann, Pavan P Ramdya, … Michael A. Unser·PLoS ONEPeer-reviewed·Apr 28, 2017
- Scoring thermal limits in small insects using open-source, computer assisted motion detection.
F. R. Perez-Galvez, A. C. Wilson, … N. M. Teets·bioRxiv·Dec 20, 2022
- SwarmSight: Real-Time Tracking of Insect Antenna Movements and Proboscis Extension Reflex using a Common Preparation and Conventional Hardware
J. Birgiolas, C. M. Jernigan, … S. Crook·bioRxiv·Sep 1, 2017
- Using TrackMate to Analyze Drosophila Larval and Adult Locomotion
A. A. Omelchenko, A. Huda, … L. Ni·bioRxiv·Sep 28, 2021
- anTraX: high throughput video tracking of color-tagged insects
Asaf Gal, Jonathan Saragosti, Daniel J. C. Kronauer·eLifePeer-reviewed·Nov 19, 2020
- ezTrack: An open-source video analysis pipeline for the investigation of animal behavior
Zachary T. Pennington, Zhe Dong, … Denise J. Cai·Scientific ReportsPeer-reviewed·Dec 27, 2019