bioRxivNeurosciencePreprint
Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity
Tomoyuki MuranoiD, Hideo HagiharaiD, Katsunori TajindaiD, Mitsuyuki MatsumotoiD, Tsuyoshi MiyakawaiD
Abstract
Biomarkers are needed to improve the diagnosis of neuropsychiatric disorders. Promising candidates are imbalance of excitation and inhibition in the brain, and maturation abnormalities. Here, we characterized different disease conditions by mapping changes in the expression patterns of maturation-related genes whose expression was altered by experimental neural hyperexcitation in published studies. This revealed two gene expression patterns: decreases in maturity markers and increases in immaturity markers. These two groups of genes were characterized by the overrepresentation of genes related to synaptic function and chromosomal modification, respectively. We used these two groups in a transdiagnostic analysis of 80 disease datasets for eight neuropsychiatric disorders and 12 datasets from corresponding animal models, and found that transcriptomic pseudoimmaturity inducible by neural hyperexcitation is shared by multiple neuropsychiatric disorders, such as schizophrenia, Alzheimer disorders, and ALS. Our results indicate that this endophenotype serve as a basis for transdiagnostic characterization of these disorders.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- BrainEXP-NPD: a database of transcriptomic profiles of human brains of six neuropsychiatric disorders
Cuihua Xia, Teng Ma, … Chunyu Liu·bioRxiv·May 30, 2021
- Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap
Michael J Gandal, Jillian Haney, … Dan H Geschwind·bioRxiv·Feb 18, 2016
- Dynamic Interrogation of Stochastic Transcriptome Trajectories Using Disease Associated Genes Reveals Distinct Origins of Neurological and Neuropsychiatric Disorders
Theodoros Bermperidis, Simon T. Schafer, … Elizabeth Barbara Torres·bioRxiv·Feb 26, 2022
- Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders
Iman Sadeghi, Juan Domingo Gispert, … Natàlia Vilor‐Tejedor·Computational and Structural Biotechnology JournalPeer-reviewed·Jan 1, 2022
- Transcriptome Analysis of Cortical Tissue Reveals Shared Sets of Down-Regulated Genes in Autism and Schizophrenia
Shannon E. Ellis, Rebecca Panitch, … Dan E. Arking·bioRxiv·Feb 18, 2016
- Normative Modelling of Molecular-based Functional Neurocircuits Captures Clinical Heterogeneity Transdiagnostically in Neuropsychiatric Patients
Timothy Lawn, Alessio Giacomel, … Ottavia Dipasquale·bioRxiv·Oct 21, 2023