CellGenomicsPeer-reviewed journal article
Universal Patterns Of Selection In Cancer And Somatic Tissues
Iñigo MartincorenaiD, Keiran M. RaineiD, Moritz GerstungiD, Kevin J. Dawson, Kerstin HaaseiD, Peter Van LooiD, Helen Ruth DaviesiD, Michael R. StrattoniD, Peter J. CampbelliD
- Citations
- 1,523
- FWCI
- 41.02
- Field percentile
- top 1%
Abstract
Cancer develops as a result of somatic mutation and clonal selection, but quantitative measures of selection in cancer evolution are lacking. We applied methods from evolutionary genomics to 7,664 human cancers across 29 tumor types. Unlike species evolution, positive selection outweighs negative selection during cancer development. On average, 10/tumor in endometrial and colorectal cancers. Half of driver substitutions occur in yet-to-be-discovered cancer genes. With increasing mutation burden, numbers of driver mutations increase, but not linearly. We identify novel cancer genes and show that genes vary extensively in what proportion of mutations are drivers versus passengers.\n\nHIGHLIGHTSO_LIUnlike the germline, somatic cells evolve predominantly by positive selection\nC_LIO_LINearly all ([~]99%) coding mutations are tolerated and escape negative selection\nC_LIO_LIFirst exome-wide estimates of the total number of driver coding mutations per tumor\nC_LIO_LI1-10 coding driver mutations per tumor; half occurring outside known cancer genes\nC_LI
- organism: human
- assay: whole-exome sequencing
- research focus: differential expression
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Recent selection is a major force driving cancer evolution
- Use of signals of positive and negative selection to distinguish cancer genes and passenger genes
L. Banyai, M. Trexler, … L. Patthy·bioRxiv·Jun 4, 2020
- Mutation-Profile-Based Methods for Understanding Selection Forces in Cancer Somatic Mutations: A Comparative Analysis
- Comparative assessment of genes driving cancer and somatic evolution.
L. Dressler, M. Bortolomeazzi, … F. D. Ciccarelli·bioRxiv·Aug 31, 2021
- Copy number losses of oncogenes and gains of tumor suppressor genes generate common driver events of human cancer
Elizaveta G. Besedina, Fran Supek·Nature CommunicationsPeer-reviewed·Jul 20, 2024
- Identification of Genes under Purifying Selection in Human Cancers
Robert A. Mathis, Ethan S. Sokol, Piyush B. Gupta·bioRxiv·Apr 25, 2017