Using multi-trait polygenic scores to predict lithium responsiveness in patients with bipolar disorder

Abstract

BackgroundThe predictive power of polygenic scores (PGSs) for lithium treatment response in bipolar disorder (BD) remains limited. AimTo enhance prediction of lithium responsiveness by developing a multi-trait PGS (mt-PGS) combining genetic information from multiple phenotypes implicated in lithium response and/or BD aetiology. MethodsWe analysed data collected from BD patients who had received lithium treatment for at least six months and participated in the International Consortium on Lithium Genetics (ConLi+Gen, N=2,367) study. The ALDA scale was used to assess lithium responsiveness, and treatment outcome was defined as continuous ALDA score (0-10) and categorical outcome (favourable [≥]7 vs unfavourable response). PGSs were calculated for 59 phenotypes grouped into five clinical-biological clusters: clinical lithium exemplar (#22 phenotypes), cardiometabolic (#17), autoimmune/inflammatory (#5), neurocognitive (#8) and renal function (#7). We applied cross-validated machine learning regression approaches in both outcomes within each cluster, and the selected features from each cluster were subsequently combined to construct the final mt-PGS models. Model performance was assessed using explained variance (R{superscript 2}) for the continuous outcome, and McFaddens pseudo-R{superscript 2} as well as standard classification model parameters for the categorical outcomes. ResultsThe mt-PGS explained 5.07% (continuous outcome) to 9.02% (categorical outcome) of the interindividual variability in lithium responsiveness. Classification accuracy (AUC) for the categorical outcome was 68.13% (95% CI: 64.86, 71.77). Of the five clusters, the PGSs for clinical lithium exemplar phenotypes were most strongly associated with lithium responsiveness, accounting for 2.97%-6.20% of its variability. ConclusionsBy integrating polygenic scores for multiple relevant phenotypes, predictive accuracy for lithium response improved up to nine-fold compared to single-trait methods. Future research incorporating larger, more diverse populations and combining genetic scores with clinical data holds promise for further enhancing prediction and advancing clinical implementation.