bioRxivBioengineeringPreprint
A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery
Thuy T. M. Ngo, Mira N. MoufarrejiD, Marie-Louise H. Rasmussen, Joan Camunas-Soler, Wenying PaniD, Jennifer Okamoto, Norma F. Neff, Keli Liu, Ronald J. WongiD, Katheryne Downes, Robert Tibshirani, Gary M. Shaw, Line SkotteiD, David K. StevensoniD, Joseph R. Biggio, Michal A. Elovitz, Mads MelbyeiD, Stephen R. QuakeiD
Abstract
We performed a high time-resolution, longitudinal study of normal pregnancy development by measuring cell-free RNA (cfRNA) in blood from women during each week of pregnancy. Analysis of tissue-specific transcripts in these samples enabled us to follow fetal and placental development with high resolution and sensitivity, and also to detect gene-specific responses of the maternal immune system to pregnancy. We established a \"clock\" for normal pregnancy development and enabled a direct molecular approach to determine expected delivery dates with comparable accuracy to ultrasound, creating the basis for a portable, inexpensive fetal dating method. We also identified a related gene set that accurately discriminated women at risk for spontaneous preterm delivery up to two months in advance of labor, forming the basis of a potential screening test for risk of preterm delivery.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
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