bioRxivCancer BiologyPreprint
Integrating experimental data to calibrate quantitative cancer models
Abstract
AbstractFor quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. Experimental data can be utilized to calibrate model dynamics rates or rate constants. Proper integration of experimental data, however, depends on the chosen theoretical framework. Using live imaging of cell proliferation as an example, we show how to derive cell cycle distributions in agent-based models and averaged proliferation rates in differential equation models. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer cells.
- assay: imaging
- research focus: cell signaling & trafficking
- research focus: cancer & tumor microenvironment
- research focus: clustering
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Challenging age-structured and first order transition cell cycle models of cell proliferation
Paolo Ubezio·SEMA SIMAI Springer seriesPeer-reviewed·Jan 1, 2024
- Agent-based modeling of cancer stem cell driven solid tumor growth
Jan T Poleszczuk, Paul Macklin, Heiko Enderling·Methods in Molecular BiologyPeer-reviewed·Apr 5, 2016
- Estimating cell cycle model parameters using systems identification
Edwin Francisco Juarez Rosales, Ahmadreza Ghaffarizadeh, … Paul Macklin·bioRxiv·Dec 31, 2015
- A Stochastic Modelling Framework for Cancer Patient Trajectories: Combining Tumour Growth, Metastasis, and Survival
Vincent Wieland, Jan Hasenauer·Journal of Mathematical BiologyPeer-reviewed·May 22, 2025
- Estimating stem cell fractions in hierarchically organized tumors
Benjamin Werner, Jacob G Scott, … Philipp M Altrock·Cancer ResearchPeer-reviewed·Mar 31, 2016
- A non-local model for cancer stem cells and the tumor growth paradox
Iacopo Borsi, Antonio Fasano, … Thomas Hillen·bioRxiv·May 21, 2015