bioRxivCell BiologyPreprint
Melanocytes Exhibit Distinct Cell States Governed by A Gene Regulatory Network Under Stochastic Influence
A. AGGARWAL, A. Nasreen, S. Sahoo, M. Faruq, R. Pandey, M. K. Jolly, A. Singh, R. S. Gokhale, V. T. Natarajan
Abstract
Melanocytes serve as a protector of the skin against external stressors such as ultraviolet radiations. While melanocytes remain functional for nearly the entire lifespan of an individual, how they respond efficiently and survive such insults remain elusive. Here, we show the co-existence of multiple distinct states of normal human epidermal melanocytes (NHEMs). Using a progressive pigmentation model, we show that stochasticity in gene expression can lead to the co-existence of multiple melanocyte states. Using active enhancers and gene expression footprint, we identified state-specific transcription factors and constructed a gene regulatory network (GRN). The GRN couples pigmentation and cell cycle regulators and explains the co-existence and transitions of the melanocyte states. Finally, we show that NHEMs respond to external cues by altering the cell state dynamics. These results demonstrate that stochasticity in gene expression followed by epigenetic modification leads to the co-existence of multiple melanocyte states enabling an efficient response to environmental cues.
- organism: human
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: gene regulatory network inference
- approach: statistical model
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