Differential analysis of RNA-Seq incorporating quantification uncertainty
Harold J Pimentel, Nicolas BrayiD, Suzette Puente, Páll MelstediD, Lior Pachter
Abstract
We describe a novel method for the differential analysis of RNA-Seq data that utilizes bootstrapping in conjunction with response error linear modeling to decouple biological variance from inferential variance. The method is implemented in an interactive shiny app called sleuth that utilizes kallisto quantifications and bootstraps for fast and accurate analysis of RNA-Seq experiments.
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