GENLIB: new function to simulate haplotype transmission in large complex genealogies
Mohan Rakesh, Hélène VézinaiD, Catherine LapriseiD, Ellen E. FreemaniD, Kelly M. BurkettiD, Marie‐Hélène Roy‐GagnoniD
Abstract
SummaryFounder populations with deep genealogical data are well suited for investigating genetic variants contributing to diseases. Here, we present a new function added to the genealogical analysis R package GENLIB, which can simulate the transmission of haplotypes from founders to probands along very large and complex user-specified genealogies. Availability and implementationThe new function is available in the latest version of the GENLIB package (v1.1.6), available on the CRAN repository and from https://github.com/R-GENLIB/GENLIB. Stand-alone scripts for analyzing the output of the function can be accessed at https://github.com/R-GENLIB/simuhaplo_scripts.
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