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The Burden of Reliability: How Measurement Noise Limits Brain-Behaviour Predictions

Martin GelliD, Simon Bodo EickhoffiD, Amir OmidvarniaiD, Vincent KüppersiD, Kaustubh R. PatiliD, Theodore Daniel SatterthwaiteiD, Veronika I. MülleriD, Robert LangneriD

Abstract

Major efforts in human neuroimaging strive to understand individual differences and find biomarkers for clinical applications by predicting behavioural phenotypes from brain imaging data. An essential prerequisite for identifying generalizable and replicable brain-behaviour prediction models is sufficient measurement reliability. However, the selection of prediction targets is predominantly guided by scientific interest or data availability rather than reliability considerations. Here we demonstrate the impact of low phenotypic reliability on out-of-sample prediction performance. Using simulated and empirical data from the Human Connectome Projects, we found that reliability levels common across many phenotypes can markedly limit the ability to link brain and behaviour. Next, using 5000 subjects from the UK Biobank, we show that only highly reliable data can fully benefit from increasing sample sizes from hundreds to thousands of participants. Overall, our findings highlight the importance of measurement reliability for identifying brain-behaviour associations from individual differences.

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Abstract summary

Verified abstract synthesis

Claude Opus 5.5 · xhigh effort · 2 Nov 2026 · from the abstract · CC BY-NC 4.0

Low phenotypic measurement reliability severely limits out-of-sample brain-behaviour prediction accuracy and prevents models from fully benefiting when neuroimaging sample sizes scale from hundreds to thousands of participants.

Predicting behavioural phenotypes from human neuroimaging requires reliable measurements for models to generalize and replicate, yet target phenotypes are typically chosen based on data availability or scientific interest rather than reliability. Using simulations and empirical cohorts, this work demonstrates how common phenotypic noise levels constrain out-of-sample brain-behaviour predictions and limit the gains from larger sample sizes.

Key results

  1. ShownTypical measurement reliability levels across behavioural phenotypes substantially restrict out-of-sample accuracy when predicting behaviour from brain imaging data.

    Demonstrated using simulated data and empirical neuroimaging and phenotypic data from the Human Connectome Projects (quantitative prediction metrics not reported in the abstract). · Abstract

  2. ShownScaling sample sizes from hundreds to thousands of participants only yields full prediction improvements when the target data have high measurement reliability.

    Evaluated across 5000 subjects from the UK Biobank (specific reliability thresholds and effect sizes not stated in the abstract). · Abstract

Methods, data and reproducibility

The authors evaluated the effect of phenotypic measurement reliability on out-of-sample brain-behaviour prediction performance using simulations alongside empirical neuroimaging cohorts across varying sample sizes.

  • Simulated and empirical brain imaging and behavioural phenotype data from the Human Connectome Projects · human
  • Brain imaging and behavioural data from the UK Biobank · human · n = 5000 subjects
Limitations (1)
  • The abstract does not report numerical reliability coefficients, prediction accuracy values, imaging modalities, or the specific machine learning algorithms used. · noted in this summary

Who should read:Read this if you build brain-behaviour prediction models from human neuroimaging data and want to understand how phenotypic measurement reliability affects out-of-sample performance and sample size scaling.

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