bioRxivBioinformaticsPreprint
Clinical-Anchored Incremental Survival Learning: A Stability-Constrained Framework for Molecularly Enhanced Survival Prediction in Lung Adenocarcinoma
Abstract
Accurate survival prediction in lung adenocarcinoma (LUAD) remains challenging because high-dimensional molecular data can introduce overfitting and unstable feature selection. We developed Clinical-Anchored Incremental Survival Learning (CAISL), a framework that integrates a sparse molecular risk correction with a clinical baseline to improve prognostic discrimination while constraining model complexity and prediction variability. CAISL was evaluated using The Cancer Genome Atlas LUAD cohort comprising 470 patients and 119 observed deaths. Performance was compared with clinical Cox, molecular-only, and unanchored multimodal models using five independently seeded, event-stratified five-fold cross-validation runs. CAISL achieved a mean concordance index (C-index) of 0.7246, compared with 0.6970 for clinical Cox, yielding an absolute improvement of 0.0276 (95% bootstrap confidence interval [CI], 0.005 to 0.050). Time-dependent discrimination was higher at three years (AUC, 0.742 vs. 0.712) and five years (AUC, 0.721 vs. 0.691), while the integrated Brier score was lower for CAISL than for clinical Cox (0.164 vs. 0.181). Ablation analysis identified clinical anchoring as the component associated with the largest reduction in discrimination when removed. Stability analysis showed a mean pairwise Jaccard similarity of 0.46 between selected feature sets and a mean Spearman correlation of 0.86 between molecular correction scores. These findings support the potential of clinically anchored, stability-constrained molecular learning to improve internal survival-risk prediction in LUAD. Independent-cohort validation is needed to establish generalizability.
- organism: human
- assay: bulk RNA-seq
- research focus: protein structure prediction
- approach: deep learning
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- DeepMPS: Development and validation of a deep learning model for whole slide image base prognostic prediction of low grade Lung adenocarcinoma patients
A. Jagjampi, S. Khadirnaikar, … S. Shukla·bioRxiv·Dec 27, 2022
- Cooperative Modular Representation Learning for Lung Adenocarcinoma Survival Prediction from Transcriptomic and Clinical Data
SUNDUS MUHAMMAD JASIM, Nabil Hezil, … Rifat Hamoudi·bioRxiv·Aug 24, 2026
- A Multimodal Neural Network Model for Early Recurrence Prediction in Lung Adenocarcinoma
Jessica Patricoski, Karma Hayek, … Ece Dilber Gamsiz Uzun·bioRxiv·May 18, 2026
- Prediction of best features in heterogeneous Lung adenocarcinoma samples using Least Absolute Shrinking and Selection Operator.
Ateeq Muhammed Khaliq, R G SHARATHCHANDRA, Meenakshi Rajamohan·International Journal of Life Science and Pharma ResearchPeer-reviewed·Oct 31, 2019
- Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
Igor Dolgalev, Hua Zhou, … Aristotelis Tsirigos·Nature CommunicationsPeer-reviewed·Nov 8, 2023
- Deep learning for histopathological subtyping and grading of lung adenocarcinoma
K. Lami, N. Ota, … J. Fukuoka·bioRxiv·Nov 2, 2022