Tropical PlantsGenomicsPeer-reviewed journal article
An improved haplotype resolved genome reveals more rice genes
Muhammad AbdullahiD, Agnelo FurtadoiD, Ardashir Kharabian MasoulehiD, Pauline OkemoiD, Robert James HenryiD
Abstract
The rice reference genome (Oryza sativa ssp. japonica cv. Nipponbare) has been an important resource in plant science. We now report an improved and haplotype resolved genome sequence based upon more accurate sequencing technology. This improved assembly includes regions missing in earlier genomes sequences and the annotation of more than 3,000 new genes due to greater sequence accuracy.
- organism: plant (other)
- assay: whole-genome sequencing
- research focus: genome assembly
- approach: experimental assay
- Citations
- 9
- FWCI
- 2.40
- Field percentile
- top 12%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Genome sequence of the model rice variety KitaakeX
Rashmi Jain, Jerry W. Jenkins, … Pamela C. Ronald·BMC GenomicsPeer-reviewed·Nov 27, 2019
- A high-quality, chromosome-scale genome assembly of the shade-tolerant wild rice, Oryza granulata
F P Zhang, Yue-hong Yang, … Li-Zhi Gao·bioRxiv·Jun 17, 2026
- Genome Assembly of the Iconic Samba Mahsuri Delineates Locus-specific Population Structure within Indica Rice
Deepti Rao, Shashi Kiran K, … Hitendra Kumar Patel·bioRxiv·Apr 23, 2026
- Nanopore-based genome assembly and the evolutionary genomics of basmati rice
J. Y. Choi, Z. Lye, … M. Purugganan·bioRxiv·Aug 13, 2019
- Oryza genome evolution through a tetraploid lens
Alice Fornasiero, Tao Feng, … Rod A. Wing·Nature GeneticsPeer-reviewed·Apr 28, 2025
- SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
Wei Li, Kui Li, … Li‐Zhi Gao·Communications BiologyPeer-reviewed·Apr 7, 2020