Rod A. Wing

The paper profiles the metabolome and genomes of five amaranth cultivars to assess nutritional quality and genetic differences.

The paper presents a gap-free, telomere-to-telomere genome assembly for date palm and 19 high-quality assemblies, revealing chromosomal structures and sex determination regions.

The paper analyzes DNA degradation in herbarium specimens over time and environments, finding faster decay rates compared to archaeological samples and highlighting environmental factors as key drivers.

The paper improves genome assembly quality assessments by incorporating evolutionary history and introduces a curated set of BUSCOs and phyca software for phylogenetic analysis.

The paper presents high-quality genome assemblies for two olive cultivars using PacBio HiFi sequencing, revealing structural differences in genes related to salt stress.

This study presents a high-quality genome assembly of Populus alba L. Villafranca using PacBio HiFi sequencing, revealing structural variants and genomic features.

The paper presents 11 new chromosome-level genome assemblies of Oryza species, revealing core genome conservation and subgenome plasticity, and highlights implications for crop improvement.

The paper develops a pan-gene catalogue for Asian cultivated rice by creating a reference panel of 16 cultivars and identifying core and cultivar-specific genes.

The paper identifies a CLAMT1 gene responsible for strigolactone production and Striga susceptibility in pearl millet by comparing genome assemblies of susceptible and resistant lines.

This study uses genome editing to improve Hassawi rice traits for sustainable cultivation, resulting in shorter growth cycles, increased productivity, and better nutritional attributes.

The paper presents high-quality genome assemblies of three Drosophila virilis sub-group species, revealing repetitive DNA dynamics and structural rearrangements driving genome divergence.

The paper presents an HPC-based workflow for genome variant calling using GATK, demonstrating SNP detection in four plant species and identifying novel SNPs in rice.

The paper presents an improved genome assembly for the saguaro cactus using long-read PacBio data, increasing size and gene count.

The paper introduces RGI, a pan-genome database for Asian rice, integrating 16 reference genomes and transcriptome data to provide gene information and visualization tools.

The paper constructs a pan-genome inversion index for Asian rice using 16 genomes and finds a high inversion rate with functional implications.

The paper presents a high-quality genome assembly of the soybean cultivar JD17 and identifies genetic variations compared to other soybean genomes.

The paper presents two gap-free rice genomes, revealing centromere structure and gene expression insights.

This paper presents a chromosome-scale genome assembly of Brassica juncea, revealing differences between its A and B genomes.

The paper announces the Fish10K project to sequence 10,000 fish genomes and describes a workflow for biospecimen procurement, sequencing, and assembly.

The paper generates 12 new high-quality rice reference genomes to expand the genetic diversity coverage of cultivated rice, forming a comprehensive pan-genome resource with 16 reference sequences.

This study investigates the evolutionary dynamics of 7 bp satellites in Drosophila virilis, identifying platform-specific sequencing biases and showing how satellite composition changes over time and space.

The paper quantifies age-related somatic mutations and epimutations in a wild Populus trichocarpa tree over 330 years, showing lower mutation rates than annuals and distinct epimutation origins.

The paper reports the de novo genome sequencing and analysis of the rice variety KitaakeX, identifying genomic variations and providing a high-quality reference for rice functional genomics.