Optimal network sizes for most robust Turing patterns
Hazlam S. Ahmad Shaberi, Aibek KappassoviD, Antonio Matas-GiliD, Robert G. EndresiD
Abstract
Many cellular patterns exhibit a reaction-diffusion component, suggesting that Turing instability may contribute to pattern formation. However, biological gene-regulatory pathways are more complex than simple Turing activator-inhibitor models and generally do not require fine-tuning of parameters as dictated by the Turing conditions. To address these issues, we employ random matrix theory to analyze the Jacobian matrices of larger networks with robust statistical properties. Our analysis reveals that Turing patterns are more likely to occur by chance than previously thought and that the most robust Turing networks have an optimal size, surprisingly consisting only of a handful of molecular species, thus significantly increasing their identifiability in biological systems. This optimal size emerges from a tradeoff between the highest stability in small networks and the greatest instability with diffusion in large networks. Furthermore, we find that with multiple immobile nodes, differential diffusion ceases to be important for Turing patterns. Our findings may inform future synthetic biology approaches and provide insights into bridging the gap to complex developmental pathways.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 7
- FWCI
- 2.11
- Field percentile
- top 13%
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Model reduction permits Turing instability analysis of arbitrary reaction-diffusion models
Stephen Smith, Neil Dalchau·Journal of The Royal Society InterfacePeer-reviewed·Mar 1, 2018
- The Design Principles of Discrete Turing Patterning Systems
Thomas Leyshon, Elisa Tonello, … Michael P. H. Stumpf·Journal of Theoretical BiologyPeer-reviewed·Sep 13, 2021
- A three-node Turing gene circuit forms periodic spatial patterns in bacteria
Jure Tica, Martina Oliver Huidobro, … Mark Isalan·Cell SystemsPeer-reviewed·Dec 1, 2024
- Turing patterns are common but not robust
Natalie S. Scholes, David Schnoerr, … Michael P. H. Stumpf·bioRxiv·Jun 20, 2018
- Turing's diffusive threshold in random reaction-diffusion systems
P. A. Haas, R. E. Goldstein·bioRxiv·Nov 9, 2020
- The Network Basis of Pattern Formation: A Topological Atlas of Multifunctional Turing Networks
Laura Regueira López de Garayo, Luciano Marcon·bioRxiv·Jan 27, 2025