Deep Learning assisted Peak Curation for large scale LC-MS Metabolomics
Abstract
Available automated methods for peak detection in untargeted metabolomics suffer from poor precision. We present NeatMS which uses machine learning to replace peak curation by human experts. We show how to integrate our open source module into different LC-MS analysis workflows and quantify its performance. NeatMS is designed to be suitable for large scale studies and improves the robustness of the final peak list.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 100
- FWCI
- 6.28
- Field percentile
- top 2%
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- PeakBot: Machine learning based chromatographic peak picking
Christoph Bueschl, Maria Doppler, … Jürgen Zanghellini·BioinformaticsPeer-reviewed·May 23, 2022
- Picky with peakpicking: assessing chromatographic peak quality with simple metrics in metabolomics
William Kumler, Bryna J. Hazelton, Anitra E. Ingalls·BMC BioinformaticsPeer-reviewed·Oct 27, 2023
- SmartPeak automates targeted and quantitative metabolomics data processing
Svetlana Kutuzova, Pasquale Colaianni, … Douglas McCloskey·Analytical ChemistryPeer-reviewed·Dec 3, 2020
- MassID provides near complete annotation of metabolomics data with identification probabilities
Ethan Stancliffe, Monil Gandhi, … Gary J. Patti·bioRxiv·Feb 14, 2026
- A novel paradigm for optimal mass feature peak picking in large scale LC-MS datasets using the isopair: isoLock, autoCredential and anovAlign
Allen Hubbard, Louis Connelly, … Ivan R. Baxter·bioRxiv·Dec 5, 2021
- WiPP: Workflow for improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) data
Nico Borgsmüller, Yoann Gloaguen, … Jennifer Kirwan·MetabolitesPeer-reviewed·Aug 21, 2019