Complete genome sequence of thermophilic cellulolytic actinobacterium Thermobifida fusca strain UPMC 901 producing thermostable cellulases.
Abstract
Thermophilic cellulolytic bacteria producing thermostable cellulase have multiple potential industrial and biotechnological applications. In this study, we reported the complete genome sequence of the species Thermobifida fusca UPMC 901 by using nano-pore sequencing technology. The represented genome is 3.76 Mb with a G + C content of 67.4%. The genome is composed of 1 scaffold with 3,193 protein-coding genes. The results indicated that the genome of the Thermobifida fusca gene encodes at least 109 genes for carbohydrate-active enzymes. Of these genes, 38 glycoside hydrolases (GHs), 36 glycosylTransferases (GTs), 21 carbohydrate-binding modules (CBMs), 9 carbohydrate esterases (CEs), and 3 polysaccharide lyases (PL) were identified. In addition, two genes encoding for lytic polysaccharide monooxygenase (LPMO), the copper-dependent enzymes that catalyse oxidative cleavage of recalcitrant crystalline cellulose, that is auxiliary activity (AAs) were also detected in the T. fusca genome. This study represented the ninth genome of the species T. fusca, and the cellulase genes identified will facilitate the exploration of potential sources from T. fusca for industrial and agricultural applications.
02 /Specification & Classification
Click any tag to browse matching papersReproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Draft genome assembly data of Anoxybacillus sp. strain MB8 isolated from Tattapani hot springs, India
V. K., Shruti S. Menon, … Vineet K. Sharma·bioRxiv·Jun 9, 2021
- The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes
Wladimir Mardones, Alex Di Genova, … Jaime P. Eyzaguirre·Mycology: An International Journal on Fungal BiologyPeer-reviewed·Jan 2, 2018
- Sequence based prediction of novel domains in the cellulosome of Ruminiclostridium thermocellum
Zarrin Basharat, Azra Yasmin·bioRxiv·Jul 27, 2016
- Tracking polyhydroxyalkanoate biosynthesis in thermophilic microorganisms
Brendan Schroyen, Radwa Moanis, … Eveline Peeters·bioRxiv·May 6, 2025
- Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables thermophilic isobutyl acetate production directly from cellulose by Clostridium thermocellum
Hyeongmin Seo, Jong-Won Lee, … Cong T. Trinh·Biotechnology for BiofuelsPeer-reviewed·Oct 15, 2019
- Thermostable mutants of glycoside hydrolase family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium
S. Yamaguchi, N. Sunagawa, … M. Samejima·bioRxiv·May 11, 2020