bioRxivGeneticsPreprint
A MUC5B polymorphism associated with Idiopathic Pulmonary Fibrosis mediates overexpression through decreased CpG methylation and C/EBPb transcriptional activation
Amaranta U. Armesto-Jimenez, Ari Jón Arason, Ólafur Andri StefánssoniD, Gunnar GuðmundssoniD, Þórarinn GuðjónssoniD, Magnús K. MagnússoniD
Abstract
Idiopathic pulmonary fibrosis is a progressive and fatal lung disease of unknown aetiology. The strongest genetic risk factor associated with IPF development is a MUC5B promoter polymorphism (rs35705950). However, the mechanism underlying its effects remains unknown. In this study we have focused on the molecular consequences of the polymorphism on the regulation of MUC5B expression. We have identified a combined mechanism involving both methylation and direct transcriptional regulation mediated by the polymorphic variant on MUC5B overexpression. Our results demonstrate that the minor allele (T) associated with rs35705950 disturbs a DNA methylation site, directly increasing MUC5B expression. Furthermore, this same variant also creates a novel binding site for the transcription factor C/EBP{beta} leading to transcriptional activation of MUC5B. Our findings provide a novel insight into the regulatory effects of the IPF risk allele, rs35705950 and identifies C/EBP{beta} as an important regulatory factor in the development of IPF.
- organism: human
- assay: DNA methylation
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
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