Journal of Chemical Theory and ComputationBiophysicsPeer-reviewed journal article
Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field
Ricky NenciniiD, Carmelo TempraiD, Denys BiriukoviD, Miguel Riopedre-FernándeziD, Víctor Cruces ChamorroiD, Jakub PolákiD, Philip E. MasoniD, Daniel OndoiD, Jan HeydaiD, O. H. Samuli OllilaiD, Pavel JungwirthiD, Matti JavanaineniD, Hector Martinez‐SearaiD
Abstract
prosECCo75 is an optimized force field effectively incorporating electronic polarization via charge scaling. It aims to enhance the accuracy of nominally nonpolarizable molecular dynamics (MD) simulations for interactions in biologically relevant systems involving water, ions, proteins, lipids, and saccharides. Recognizing the inherent limitations of nonpolarizable force fields in precisely modeling electrostatic interactions essential for various biological processes, we mitigate these shortcomings by accounting for electronic polarizability in a physical rigorous mean-field way that does not add to computational costs. With this scaling of (both integer and partial) charges within the CHARMM36 framework, prosECCo75 addresses overbinding artifacts. This improves agreement with experimental ion binding data across a broad spectrum of systems -- lipid membranes, proteins (including peptides and amino acids), and saccharides -- without compromising their biomolecular structures. prosECCo75 thus emerges as a computationally efficient tool providing enhanced accuracy and broader applicability in simulating the complex interplay of interactions between ions and biomolecules, pivotal for improving our understanding of many biological processes.
- assay: proteomics
- assay: metagenomics
- research focus: protein folding & dynamics
- research focus: drug response / drug discovery
- research focus: cell type annotation
- approach: deep learning
- approach: statistical model
- Citations
- 36
- FWCI
- 4.14
- Field percentile
- top 4%
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