Author

Jan Heyda

University of Chemistry and Technology, PragueORCID 0000-0002-9428-9508Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Biophysics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:mechanistic / dynamical model· 1 Assay:metagenomics· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1

Frequent Co-Authors

Denys BiriukoviD· 2 shared Pavel JungwirthiD· 2 shared Philip E. MasoniD· 2 shared Carmelo TempraiD· 1 shared Daniel OndoiD· 1 shared Hector Martinez‐SearaiD· 1 shared Jakub PolákiD· 1 shared Man Thi Hong Nguyen· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiophysics

Denys BiriukovORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BiophysicsAggregatePeer-reviewedJan 29, 2026

The Origins of Arginine "Magic": Guanidinium Like-Charge Ion Pairing and Oligoarginine Aggregation in Water by NMR, Cryoelectron Microscopy, and Molecular Dynamics Simulations

Denys Biriukov, Zuzana Osifová, Man Thi Hong Nguyen…·Mario Vazdar

This study quantifies weak like-charge pairing of guanidinium ions in water using NMR, MD simulations, and cryo-EM, contrasting with ammonium ions and showing oligoarginine aggregation.

2 citations

experimental assaymechanistic / dynamical model

𝕏 PostBluesky

BiophysicsJournal of Chemical Theory and ComputationPeer-reviewedAug 26, 2024

Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field

Ricky Nencini, Carmelo Tempra, Denys Biriukov…·Hector Martinez‐Seara

prosECCo75 improves MD simulations by incorporating electronic polarization, enhancing accuracy in modeling electrostatic interactions in biological systems without increasing computational cost.

36 citationstop 4%

proteomicsmetagenomics

𝕏 PostBluesky