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bioRxivEvolutionary BiologyPreprint

Deterministic approximation for population dynamics in the presence of advantageous mutants

I. Rodriguez-Brenes, D. Wodarz, N. Komarova

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Abstract

Spatial stochastic simulations of evolutionary processes are computationally expensive. Here, based on spatially explicit decoupling approximations (SEDA) introduced in [1], we derive a deterministic approximation to a spatial stochastic birth-death process in the presence of two types: the less advantageous resident type and a more advantageous mutant. At the core of this technique are two essential steps: (1) a system of ODEs that approximate spatial interactions among neighboring individuals must be solved; (2) the time-variable has to be rescaled with a factor (called "") that depends on the kinetic parameters of the wild type and mutant individuals. An explicit formula for is derived, which is a power law of division and death rates of the two types. The method is relatively fast and provides excellent time-series agreement with the stochastic simulation results for the spatial agent-based model. The methodology can be used to describe hard selective sweep events, including the expansion of driver mutations in carcinogenesis, bacterial evolution, and aspects of resistance dynamics.

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THISStein '23Shaw '22Wodarz '19Sharma '25Krishnan '21Komarova '24
63% semantic matchEvolutionary Biology
A. Stein, R. Kizhuttil, M. Bak+1 more·bioRxiv·Nov 27, 2023