BioinformaticsSystems BiologyPeer-reviewed journal article
GEMtractor: Extracting Views into Genome-scale Metabolic Models
Martin ScharmiD, Olaf Wolkenhauer AiD, Mahdi JaliliiD, Ali Salehzadeh‐YazdiiD
Abstract
SummaryComputational metabolic models typically encode for graphs of species, reactions, and enzymes. Comparing genome-scale models through topological analysis of multipartite graphs is challenging. However, in many practical cases it is not necessary to compare the full networks. The GEMtractor is a web-based tool to trim models encoded in SBML. It can be used to extract subnetworks, for example focusing on reaction- and enzyme-centric views into the model.\n\nAvailability and ImplementationThe GEMtractor is licensed under the terms of GPLv3 and developed at github.com/binfalse/GEMtractor - a public version is available at sbi.uni-rostock.de/gemtractor.\n\nContactmartin.scharm@uni-rostock.de and ali.salehzadeh-yazdi@uni-rostock.de
- Citations
- 3
- FWCI
- 0.08
- Field percentile
- 32th percentile
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