bioRxivCancer BiologyPreprint
HIF1α and HIF2α mRNA Expression in Oral Squamous Cell Carcinoma does not correlate with protein expression
Pooja SinghiD, Manoj PandeyiD, Gopal NathiD, Deepak Kumar, Amrita Ghosh KariD
Abstract
BackgroundOral cancer is one of the common cancers among men, its presentation is usually late. Tumor growth leads to hypoxia, and HIF1 and HIF2 are important regulators of hypoxia induced pathways, inducing angiogenesis and tumor growth. This study compares the expression levels of HIF1 and HIF2 mRNA in OSCC tissues to adjacent normal mucosa. MethodsRNA was isolated from 85 OSCC tissues and adjacent normal mucosa followed by real-time (RT) PCR to quantify HIF1 and HIF2 expression using GAPDH and {beta}-actin respectively as reference genes. ResultsHIF1 overexpression was detected in 76.47% of case and 71.76% of controls (p=0.4906), whereas HIF2 overexpression occurred in 91.76% of cases 94.11% of controls (p=0.35). HIF1 and HIF2 expression level were not significantly different in OSCC tissues compared to adjacent normal mucosa. ConclusionHIF1 and HIF2 play important role in hypoxia induced pathways and tumor progression, yet this study found no significant variation in expression between OSCC tissues and surrounding normal tissues. This suggest that their expression may be due to physiological adaptability to hypoxia or stress, or may be due to use of adjacent tissue as control and loss of protein expression could be due to post translational modifications.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Role of Chemokine and TNF signaling pathway in oral squamous cell carcinoma: A RNA deep sequencing analysis of oral buccal mucosa squamous carcinoma model of Chinese hamster
Guoqiang Xu, Jianing Wei, … Guohua Song·bioRxiv·Sep 23, 2019
- Hypoxia reduces induced LRIG1 protein despite sustained mRNA induction in colorectal cancer organoids
Akari Minamiura, Shuto Aoki, … Jumpei Kondo·bioRxiv·Oct 20, 2026
- Cyclin G2 inhibits oral squamous cell carcinoma growth and metastasis by binding to insulin-like growth factor binding protein 3 and regulating the FAK-SRC-STAT signaling pathway
- Cytoplasmic capping enzyme targeted, hypoxia-responsive RNAs, RORA and KCTD16 modulate the aggressiveness of CoCl2-induced hypoxic osteosarcoma cells
Safirul Islam, Utpal Bakshi, Chandrama Mukherjee·bioRxiv·Apr 1, 2026
- Integrative Multiomics Analysis of the Angiogenesis-EMT Interface in Head and Neck Squamous Cell Carcinoma
Sreyashi Das, Elimathi Natarajan, … Rizwan Shaikh·bioRxiv·Nov 6, 2026
- PIAS1 loss and INHBA gain define a TGFβ-driven EMT state in OSCC progression
Ayan Chanda, Parisa Ghahremanifard, … Pinaki Bose·bioRxiv·Sep 22, 2026