PicoCam: High-resolution 3D imaging of live animals and preserved specimens
Josh Medina, Duncan J. IrschickiD, Kevin EpperlyiD, David CubaniD, Rosalee EltingiD, Lucas MansfieldiD, Nora Lee, Ana Melisa FernandesiD, Felipe Garzón-AgudeloiD, Alejandro Rico‐GuevaraiD
Abstract
1. The PicoCam system is a multi-camera photogrammetry rig used for generating high-resolution 3D models of animals in the field, or preserved specimens in laboratory or museum settings. The digital measurement of 3D models is increasingly useful for studying body shape. However, methods that capture sub-millimetric detail often do so at the cost of portability and versatility; this system aims to bridge this gap. 2. The PicoCam system employs 3D digital photogrammetry, a process that generates accurate, full-color, 3D models from sequences of photographs. By using six cameras and a rotating base, the system is able to capture multiple angles in rapid succession - a key advantage for both 3D-imaging live specimens and efficiently scanning museum specimens. Through the use of macro lenses and high-resolution camera sensors, this system can capture sub-millimetric detail without sacrificing portability. 3. In this study, we 3D imaged the bills of 19 species of hummingbirds using the PicoCam system and measured length, height, width, surface area, and volume of their bills. We examined eight species in the field and 11 from the Burke Museum in Seattle. We chose Hummingbird bills as a model system, as their fine-scale interspecific differences in 3D shape can have significant functional and behavioral implications, and could tell us more about how these traits predict habitat and resource use. 4. The prospect of a common 3D-imaging method for both museum and field use is compelling when documenting structures shape within and among species. The PicoCam system is also valuable for quantifying the 3D shape of fine-scale phenotypes (like hummingbird bills) that benefit from digital measurement, preservation, and improved accessibility. Lastly, the PicoCam system allows "digital 3D collection", by which the shape of biological structures in the field can be recorded and stored in a public database without the need to collect a specimen. This opens the door to studies in which multiple 3D image captures of the same individual across different time scales permit 3D shape/color comparisons (e.g., seasonal, ontogenetic changes).
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 8
- FWCI
- 1.88
- Field percentile
- top 15%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Peering into the world of wild passerines with 3D-SOCS: synchronized video capture and posture estimation
Michael Chimento, Alex Hoi Hang Chan, … Fumihiro Kano·Methods in Ecology and EvolutionPeer-reviewed·Jun 11, 2025
- DishCam: an open-source 3D-printed darkfield imager for microbial colonies and small organisms on Petri dishes
David M. Versluis, Mattias Benninger, … Robert H. Insall·bioRxiv·Jul 16, 2026
- 3D Reconstruction of Bird Flight Trajectories Using a Single Video Camera
M. V. Srinivasan, H. D. Vo, I. Schiffner·bioRxiv·Jan 3, 2022
- WildPose: A Long-Range 3D wildlife motion capture system
Naoya Muramatsu, Sangyun Shin, … Amir Patel·Journal of Experimental BiologyPeer-reviewed·Jan 28, 2025
- Lights, Camera, Mirrors, Action! Toolbox for 3D Reconstruction and Analysis Using a Single Camera and Planar Mirrors
M. w. hussain, M. Naveed, … A. Maqsood·bioRxiv·Mar 14, 2023
- The potential applications of high-resolution 3D scanners in the taxonomic classification of insects
Cameron J. Peacock, William Romeu‐Evans, … Christopher Hassall·Ecology and EvolutionPeer-reviewed·Aug 1, 2025