Genome biologyBioinformaticsPeer-reviewed journal article
Genome Build Information Is An Essential Part Of Genomic Track Files
Chakravarthi KanduriiD, Diana DomańskaiD, Eivind J. HovigiD, Geir Kjetil SandveiD
Abstract
Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. It is essential to correctly interpret and analyse the genomic intervals contained in genomic track files. Here, we demonstrate that this crucial metadatum (or rather datum) is often isolated from the genomic track files in public repositories and journal articles, which could be a major time thief. We propose best practices to ensure that genome build version is always carried along with genomic track files. Although not a substitute to the best practices, we also provide a tool to predict the genome build version of genomic track files.
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- 5
- FWCI
- 0.33
- Field percentile
- top 43%
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