henhaobio
Sign in

Genome biologyBioinformaticsPeer-reviewed journal article

Genome Build Information Is An Essential Part Of Genomic Track Files

Chakravarthi KanduriiD, Diana DomańskaiD, Eivind J. HovigiD, Geir Kjetil SandveiD

PDFDOIPreprint

Abstract

Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. It is essential to correctly interpret and analyse the genomic intervals contained in genomic track files. Here, we demonstrate that this crucial metadatum (or rather datum) is often isolated from the genomic track files in public repositories and journal articles, which could be a major time thief. We propose best practices to ensure that genome build version is always carried along with genomic track files. Although not a substitute to the best practices, we also provide a tool to predict the genome build version of genomic track files.

Citations
5
FWCI
0.33
Field percentile
top 43%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.