Diana Domańska

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

The paper identifies ultra long-lived plasma cells in the human small intestine that produce IgA antibodies reactive to a diverse microbiota, suggesting long-term immune memory shaping the microbiome.

This study investigates the role of Slc38a1 in neurogenesis and brain development, finding it essential for embryonic neurodevelopment and impacting neuronal morphology and viability.

Easydecon efficiently maps cell types to high-definition spatial transcriptomic data by combining hotspot detection and similarity-based refinement.

The paper uses single-cell spatial transcriptomics to identify coordinated cellular programs in MSS colorectal cancer that correlate with prognosis.

Cellsnake provides a user-friendly, reproducible workflow for scRNA-seq analysis, addressing installation and learning curve issues for non-expert users.

MirGeneDB 2.0 expands curated microRNA gene annotations to 45 metazoan species, revealing many false positives and missing miRNAs in previous annotations.

The paper shows that the choice of metric significantly affects genomic co-occurrence analysis and proposes alternative approaches to guide this choice.

The paper shows that ignoring assembly gaps in statistical tests for genomic feature co-localization can lead to false positives and inflated significance.

The paper highlights the importance of including genome build information in genomic track files and provides a tool to predict missing build versions.