bioRxivBioinformaticsPreprint
Maggot: An ecosystem for sharing metadata within the web of FAIR Data
Daniel J JacobiD, François EhrenmanniD, Romain DavidiD, Joseph TraniD, Cathleen Mirande‐NeyiD, Philippe ChaumeiliD
- Citations
- 0
Abstract
BackgroundDescriptive metadata are crucial for the discovery, reporting and mobilisation of research datasets. Addressing all metadata issues within the Data Management Plan often poses challenges for data producers. Organising and documenting data within data storage entails creating various descriptive metadata. Subsequently, data sharing involves ensuring metadata interoperability in alignment with FAIR principles. Given the tangible nature of these challenges, a real need for management tools has to be addressed to assist data managers to the fullest extent. Moreover, these tools have to meet data producers requirements and be user-friendly as well with minimal training as prerequisites. ResultsWe developed Maggot which stands for Metadata Aggregation on Data Storage, specifically designed to annotate datasets by generating metadata files to be linked into storage spaces. Maggot enables users to seamlessly generate and attach comprehensible metadata to datasets within a collaborative environment. This approach seamlessly integrates into a data management plan, effectively tackling challenges related to data organisation, documentation, storage, and frictionless FAIR metadata sharing within the collaborative group and beyond. Furthermore, for enabling metadata crosswalk, metadata generated with Maggot can be converted for a specific data repository or configured to be exported into a suitable format for data harvesting by third-party applications. ConclusionThe primary feature of Maggot is to ease metadata capture based on a carefully selected schema and standards. Then, it greatly eases access to data through metadata as requested nowadays in projects funded by public institutions and entities such as Europe Commission. Thus, Maggot can be used on one hand to promote good local versus global data management with open data sharing in mind while respecting FAIR principles, and on the other hand to prepare the future EOSC FAIR Web of Data within the framework of the European Open Science Cloud.
- research focus: database / resource
- research focus: benchmarking
- research focus: software / tool
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data Points
Daphne Wijnbergen, Rajaram Kaliyaperumal, … Eleni Mina·BMC Medical Informatics and Decision MakingPeer-reviewed·Jun 10, 2025
- FRED: a universal tool to generate FAIR metadata for omics experiments
Jasmin Walter, Carsten Tobias Kuenne, … Mario Looso·bioRxiv·Feb 4, 2026
- FAIR Data Station for Lightweight Metadata Management & Validation of Omics Studies
Bart Nijsse, Peter J. Schaap, Jasper J. Koehorst·GigaSciencePeer-reviewed·Dec 28, 2022
- COPO: a metadata platform for brokering FAIR data in the life sciences
Felix Shaw, Anthony Etuk, … Robert Davey·F1000ResearchPeer-reviewed·Jun 2, 2020
- Developing a standardized but extendable framework to increase the findability of infectious disease datasets
Ginger Tsueng, Marco Alvarado Cano, … Serdar Turkarslan·Scientific DataPeer-reviewed·Feb 23, 2023
- BioSharing: Harnessing Metadata Standards For The Data Commons
Susanna-Assunta Sansone, Alejandra Gonzalez-Beltran, … Milo Thurston·bioRxiv·May 31, 2017