Author

A. Auger

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

A. Harari· 2 shared G. Coukos· 2 shared M. Arnaud· 2 shared M. Bassani-Sternberg· 2 shared A. Hirsekorn· 1 shared A. Mercier· 1 shared A. Michel· 1 shared A. Orcurto· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersCancer Biology

A. Harari

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Tumor-reactive clonotype dynamics underlying clinical response to TIL therapy in melanoma

J. Chiffelle, D. Barras, R. Petremand, A. Orcurto, S. Bobisse, M. Arnaud, A. Auger, B. Navarro Rodrigo, E. Ghisoni, C. Sauvage, D. Saugy, A. Michel, B. Murgues, N. Fahr, M. Imbimbo, , G. Coukos

This study tracks tumor-reactive TIL clonotypes in melanoma patients before and after TIL-ACT to identify factors associated with clinical response.

bioRxiv · Jul 21, 2023 · PreprintCancer Biology

The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations

A. Mercier, F. Carpentier, C. Duplaix, A. Auger, J.-M. Pradier, M. Viaud, P. Gladieux, A.-S. Walker

This study shows that Botrytis cinerea populations are specialized to tomato and grapevine but not other hosts, with some populations acting as generalists.

bioRxiv · Oct 7, 2019Microbiology

Integrated Proteogenomic Deep Sequencing and Analytics Accurately Identify Non-Canonical Peptides in Tumor Immunopeptidomes

C. Chong, M. Muller, H. Pak, D. Harnett, F. Huber, D. Grun, M. Leleu, A. Auger, M. Arnaud, B. J. Stevenson, J. Michaux, I. Bilic, A. Hirsekorn, L. Calviello, L. Simo-Riudalbas, , M. Bassani-Sternberg

The paper develops an MS-based proteogenomic approach to identify non-canonical HLA peptides in tumors, finding hundreds of shared and tumor-specific peptides, including an immunogenic one from ABCB5.

bioRxiv · Sep 6, 2019Cancer Biology