Author

A. Penesyan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 4 Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

M. R. Gillings· 3 shared Q. Qi· 3 shared S. G. Tetu· 3 shared T. M. Ghaly· 3 shared V. Rajabal· 3 shared A. Azad· 1 shared A. F. Tanzim· 1 shared A. Pritchard· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersMicrobiology

M. R. Gillings

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Uncovering Bacterial Hosts of Class 1 Integrons in an Urban Coastal Aquatic Environment with a Single-Cell Fusion-Polymerase Chain Reaction Technology

Q. Qi, T. M. Ghaly, A. Penesyan, V. Rajabal, J. A. Stacey, S. G. Tetu, M. R. Gillings

The paper develops a modified epicPCR method to identify bacterial hosts of class 1 integrons in polluted coastal waters, revealing Rhizobacter as a novel host.

bioRxiv · Feb 9, 2023Microbiology

dSeqSb: A systems biology approach to decipher dynamics of 1 host-pathogen interactions using temporal dual RNA-seq data

M. Dinarvand, F. Koch, D. A. Mouiee, K. Vuong, A. Vijayan, A. F. Tanzim, A. Azad, A. Penesyan, N. Castano-Rodriguez, F. Vafaee

dRNASb analyzes temporal dual RNA-seq data to uncover host-pathogen gene interactions and key transcripts involved in infection processes.

bioRxiv · Feb 28, 2022Microbiology

Discovery of integrons in Archaea: platforms for cross-domain gene transfer

T. M. Ghaly, S. G. Tetu, A. Penesyan, Q. Qi, V. Rajabal, M. R. Gillings

The paper identifies integrons in Archaea and demonstrates their role in facilitating horizontal gene transfer between Archaea and Bacteria.

bioRxiv · Feb 6, 2022Microbiology

Methods for the targeted sequencing and analysis of integrons and their gene cassettes from complex microbial communities

T. M. Ghaly, A. Penesyan, A. Pritchard, Q. Qi, V. Rajabal, S. G. Tetu, M. R. Gillings

This paper presents standardized methods for PCR amplification, sequencing, and validation of integron gene cassettes from complex microbial communities, demonstrating their ability to recover diverse functional elements including antibiotic resistance genes.

bioRxiv · Sep 8, 2021Microbiology