Author

Aanya Gupta

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Holden Terry MaeckeriD· 2 shared Barry J. GrantiD· 1 shared Bjoern PetersiD· 1 shared Brendan Ha· 1 shared Burhanuddin SabuwalaiD· 1 shared Cemil Can Ali Marandi· 1 shared Cheng-Chang WuiD· 1 shared Chuxuan LiiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersImmunology

Holden Terry MaeckerORCID

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3 papers

Recent·Most cited

An Open Benchmark for Systems Vaccinology: Insights from the CMI-PB Challenges

Pramod S. Shinde, Lisa Willemsen, Jiyeun Lee, Shelby Orfield, Ziyuan Ren, Minori Aoki, Nicola Thrupp, Aanya Gupta, Cheng-Chang Wu, Liran Mao, Chuxuan Li, Yuhao Tan, Tram Anh Nguyen, Nou Chang, Philipp S. L. Schäfer, , Bjoern Peters

The paper benchmarks computational models predicting B. pertussis booster vaccine responses using multi-omics data from three cohorts, identifying key predictors of immunity and establishing a community resource for systems vaccinology.

bioRxiv · Aug 28, 2026 · PreprintImmunology

Comprehensive Analysis of Multi-Omics Vaccine Response Data Using MOFA and Stabl Algorithms

Aanya Gupta, Koji Abe, Holden Terry Maecker

This study uses MOFA and Stabl algorithms to analyze multi-omics vaccine response data, identifying key features for predicting vaccine response and comparing the performance of these methods.

Frontiers in Bioinformatics · Nov 13, 2025Peer-reviewedImmunology

Serum cytokines during acute respiratory infection and relationship to age

Aanya Gupta, Holden Terry Maecker

This study examines cytokine levels in serum during acute respiratory infection and their relationship to age, finding elevated pro-inflammatory cytokines in infected individuals and age-related trends in healthy cohorts.

Journal of Cellular Immunology · Jan 1, 2025Peer-reviewedImmunology