Building computational benchmarks: an Omnibenchmark reimplementation of a single-cell preprocessing pipeline evaluation
Atreya Choudhury, Tom Kitak, Ben Carrillo, Pauline Busch, Martin Emons, Samuel Gunz, Maruša Koderman, Siyuan Luo, Izaskun Mallona, Aidan Meara, David Wissel, Mark D. Robinson
The paper evaluates five single-cell RNA sequencing pipelines using Omnibenchmark, highlighting differences in parameter implementation across tools.
bioRxiv · May 5, 2026 · PreprintBioinformatics