Samuel Gunz

Differential co-localisation analysis of multi-sample and multi-condition experiments with spatialFDA

The paper introduces spatialFDA, a framework for analyzing differential co-localisation in spatial omics data, showing its effectiveness in controlled simulations and biological applications.

Analysis of multicellular anatomical structures from spatial omics data using sosta

The paper introduces a method for analyzing multicellular anatomical structures from spatial omics data and provides an open-source tool for this purpose.

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering

The paper introduces SACCELERATOR, a framework for spatially aware clustering that improves benchmarking by incorporating expert feedback and consensus analysis across diverse datasets.

Building computational benchmarks: an Omnibenchmark reimplementation of a single-cell preprocessing pipeline evaluation

The paper evaluates five single-cell RNA sequencing pipelines using Omnibenchmark, highlighting differences in parameter implementation across tools.

A transcriptional map of human tonsil architecture:beyond the sum of (single cell) parts

The paper uses spatial molecular imaging data to map human tonsil architecture and provides an analytical framework for Spatial Immunology.

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

The paper provides an open-source online book for analyzing spatial transcriptomics data using Bioconductor in R, with reproducible code and datasets.