Maruša Koderman

The paper evaluates five single-cell RNA sequencing pipelines using Omnibenchmark, highlighting differences in parameter implementation across tools.

scprocess is a Snakemake pipeline that automates and integrates single cell RNA sequencing data processing, enabling reproducible and scalable analysis of large datasets.

This study identifies GLUL upregulation and altered glutamate/glutamine metabolism in prion-infected skeletal muscle, distinct from other neurodegenerative diseases.

The paper identifies early translatome changes in specific neural cell types before EEG and neuropathological signs of prion disease in mice.