Author

Ailsa J Carlisle

Roslin Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:CUT&Tag· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Adam BaliciD· 1 shared Adam D. EwingiD· 1 shared Ahmad M. N. Alhendi· 1 shared Akira HasegawaiD· 1 shared Alan L. ArchibaldiD· 1 shared Alessandra CarboneiD· 1 shared Alessandro BonettiiD· 1 shared Alexander D. DiehliD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Adam BalicORCID

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Author profile →

2 papers

Recent·Most cited

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A. Ramilowski, Jessica Severin, Yoshihide Hayashizaki, Masayoshi Itoh, Michihira Tagami, Mitsuyoshi Murata, Miki Kojima-Ishiyama, Shohei Noma, Shuhei Noguchi, Takeya Kasukawa, Akira Hasegawa, , Lothar C. Dieterich

The paper identifies widespread transcription initiation at microsatellites across species and develops deep learning models to predict STR-associated transcription and its impact on disease variants.

Nature Communications · Jun 2, 2021Peer-reviewedGenomics

Arginine to glutamine mutation in olfactomedin-like 3 (OLFML3) is a candidate for severe goniodysgenesis and glaucoma in the Border Collie dog breed.

Carys Pugh, Lindsay L. Farrell, Ailsa J Carlisle, Stephen J. Bush, Adam D. Ewing, Violeta Trejo-Reveles, Oswald Matika, Arne de Kloet, Caitlin Walsh, Stephen Christopher Bishop, James G. D. Prendergast, Joe Rainger, Jeffrey J. Schoenebeck, KIM M. SUMMERS

The paper identifies a missense variant in OLFML3 as a candidate for severe goniodysgenesis and glaucoma in Border Collies.

G3 Genes Genomes Genetics · Jan 29, 2019Peer-reviewedGenetics