Author

Aiyappa Parvangada

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Amir AlaviiD· 1 shared Danielle PorteriD· 1 shared Evguenia S. Svarovskaia· 1 shared Hongmei Mo· 1 shared Jason K. PerryiD· 1 shared Jiani LiiD· 1 shared Matthew RuffaloiD· 1 shared Ross MartiniD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Amir AlaviORCID

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Author profile →

2 papers

Recent·Most cited

Genetic Conservation of SARS-CoV-2 RNA Replication Complex in Globally Circulating Isolates and Recently Emerged Variants from Humans and Minks Suggests Minimal Pre-Existing Resistance to Remdesivir

Ross Martin, Jiani Li, Aiyappa Parvangada, Jason K. Perry, Tomáš Cihlář, Hongmei Mo, Danielle Porter, Evguenia S. Svarovskaia

The paper analyzes genetic diversity in SARS-CoV-2 RNA replication complex across global isolates and variants, finding minimal pre-existing resistance to remdesivir.

Antiviral Research · Feb 6, 2021Peer-reviewedGenomics

scQuery: a web server for comparative analysis of single-cell RNA-seq data

Amir Alavi, Matthew Ruffalo, Aiyappa Parvangada, Zhilin Huang, Ziv Bar‐Joseph

scQuery provides a web server for supervised comparison of single-cell RNA-seq datasets, showing supervised methods outperform unsupervised approaches in cell type identification.

Nature Communications · Nov 7, 2018Peer-reviewedBioinformatics