Author

Alden Deran

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Organism:non-human primate· 1 Approach:statistical model· 1

Frequent Co-Authors

Benedict PateniD· 2 shared Glenn HickeyiD· 2 shared Brendan O'Connell· 1 shared Carl Schmidt· 1 shared Cathy Gresham· 1 shared Colin Kern· 1 shared David A. RayiD· 1 shared David H. HaussleriD· 1 shared

Activity by Year

2017-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Benedict PatenORCID

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2 papers

Recent·Most cited

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

Joel C. Armstrong, Glenn Hickey, Mark Diekhans, Alden Deran, Qi Fang, Duo Xie, Shaohong Feng, Josefin Stiller, Diane P. Genereux, Jeremy Johnson, Voichita Dana Marinescu, David H. Haussler, Jessica Alföldi, Kerstin Lindblad‐Toh, Elinor K. Karlsson, , Benedict Paten

The paper improves the Cactus multiple-genome aligner to handle large numbers of vertebrate genomes with high accuracy and better orthology resolution.

bioRxiv · Oct 15, 2019 · PreprintGenomics

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

Edward Stallknecht Rice, Satomi Kohno, John St. John, Son Pham, Jonathan Howard, Liana Lareau, Brendan O'Connell, Glenn Hickey, Joel Armstrong, Alden Deran, Ian Fiddes, Roy N. Platt, Cathy Gresham, Fiona McCarthy, Colin Kern, , Richard E Green

The paper improves the American alligator genome assembly and identifies estrogen-responsive regions linked to female-biased gene expression in post-temperature-sensitive gonads.

Genome Research · Jan 30, 2017Peer-reviewedGenomics