Author

Alex Hakansson

Sanford Burnham Prebys Medical Discovery Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Carlo PiermarocchiiD· 2 shared Giovanni PaternostroiD· 2 shared Sergii DomanskyiiD· 2 shared Benjamin K. PhamiD· 1 shared Joshua Graff ZiviniD· 1 shared Michelle Y. MengiD· 1 shared Napoleone FerraraiD· 1 shared Thomas J. Bertus· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 24 mutual co-author links

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2 shared papersSystems Biology

Carlo PiermarocchiORCID

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2 papers

Recent·Most cited

Naturally occurring combinations of receptors from single cell transcriptomics in endothelial cells

Sergii Domanskyi, Alex Hakansson, Michelle Y. Meng, Benjamin K. Pham, Joshua Graff Zivin, Carlo Piermarocchi, Giovanni Paternostro, Napoleone Ferrara

The paper identifies naturally occurring receptor combinations in endothelial cells using single-cell data and introduces a software tool to analyze them, showing evolutionary conservation and relevance to angiogenesis.

Scientific Reports · Apr 6, 2022Peer-reviewedSystems Biology

Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics

Sergii Domanskyi, Alex Hakansson, Thomas J. Bertus, Giovanni Paternostro, Carlo Piermarocchi

The paper introduces DCS, a toolkit for scRNA-seq analysis that includes cell type identification, anomaly detection, and visualization tools, demonstrating its effectiveness on PBMC and plasma cell datasets.

PeerJ · Jan 13, 2021Peer-reviewedBioinformatics