Author

Alexander Frey

Yale University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Approach:optimal transport· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Antonio H. de O. Fonseca· 1 shared Bao WangiD· 1 shared Curtis J. PerryiD· 1 shared David van DijkiD· 1 shared Ellen F. FoxmaniD· 1 shared Feriel OuerghiiD· 1 shared Jeffrey Joseph IshizukaiD· 1 shared Jessica WeiiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Antonio H. de O. Fonseca

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1 paper

Recent·Most cited

Causal identification of single-cell experimental perturbation effects with CINEMA-OT

Mingze Dong, Bao Wang, Jessica Wei, Antonio H. de O. Fonseca, Curtis J. Perry, Alexander Frey, Feriel Ouerghi, Ellen F. Foxman, Jeffrey Joseph Ishizuka, Rahul M. Dhodapkar, David van Dijk

CINEMA-OT identifies causal effects of single-cell perturbations by separating confounding variation, outperforming existing methods on simulated and real datasets.

Nature Methods · Nov 1, 2023Peer-reviewedBioinformatics