Author

Ellen F. Foxman

Yale UniversityORCID 0000-0001-9767-9942Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Bao WangiD· 2 shared David van DijkiD· 2 shared Adam WilliamsiD· 1 shared Akiko IwasakiiD· 1 shared Alexander Frey· 1 shared Anna Marie PyleiD· 1 shared Antonio H. de O. Fonseca· 1 shared Craig B. WileniD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Bao WangORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedNov 1, 2023

Causal identification of single-cell experimental perturbation effects with CINEMA-OT

Mingze Dong, Bao Wang, Jessica Wei…·David van Dijk

CINEMA-OT identifies causal effects of single-cell perturbations by separating confounding variation, outperforming existing methods on simulated and real datasets.

93 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 6, 2020

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium

Neal G. Ravindra, Mia Madel Alfajaro, Victor Gasque…·Craig B. Wilen

Time-course single-cell RNA sequencing of infected human bronchial epithelial cultures reports ciliated cells as a major target, with tropism later widening to basal and club cells.

74 citations

humanscRNA-seq

𝕏 PostBluesky