Author

Alicia Clum

Primary ORCID profile (0000-0002-5004-3362 · 5 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Alicia ClumiD5 papers · Lawrence Berkeley National Laboratory

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:Arabidopsis· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Abraham Morales-Cruz· 1 shared Chen-Shan ChiniD· 1 shared Chongyuan LuoiD· 1 shared Christopher Dunn· 1 shared Dario Cantu· 1 shared David R. RankiD· 1 shared Fritz J. SedlazeckiD· 1 shared Grant R. Cramer· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Abraham Morales-Cruz

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2 papers

Recent·Most cited

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

Chen-Shan Chin, Paul Peluso, Fritz J. Sedlazeck, Maria Nattestad, Gregory T. Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz, Grant R. Cramer, Massimo Delledonne, Chongyuan Luo, Joseph R. Ecker, Dario Cantu, , Michael C. Schatz

This paper introduces FALCON and FALCON-Unzip algorithms to assemble diploid genomes from SMRT sequencing data, demonstrating improved contiguity and phasing compared to short-read methods.

bioRxiv · Jun 3, 2016Bioinformatics

BIGMAC : Breaking Inaccurate Genomes and Merging Assembled Contigs for long read metagenomic assembly

Ka Kit Lam, Richard Hall, Alicia Clum, Satish Rao

BIGMAC improves metagenomic assembly quality by post-processing assembled contigs with original long reads, reducing mis-assemblies while maintaining or increasing N50 and N75.

bioRxiv · Mar 29, 2016Bioinformatics