Author

Amanda M. Gilbert

University of Minnesota

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genomics· 2 Plant Biology· 2

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Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:zebrafish· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Candice N. HirschiD· 4 shared Arun Somwarpet SeetharamiD· 2 shared David E. HufnageliD· 2 shared Doreen WareiD· 2 shared Jianing LiuiD· 2 shared Kapeel M. ChouguleiD· 2 shared Kevin A. FengleriD· 2 shared Margaret Roth WoodhouseiD· 2 shared

Activity by Year

2020-2026 · peak 1/yr

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10 top collaborators · 37 mutual co-author links

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4 shared papersPlant Biology

Candice N. HirschORCID

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4 papers

Recent·Most cited

Maize kernel composition and morphology influences pericarp retention during nixtamalization

Michael J. Burns, Sydney P. Berry, Amanda M. Gilbert, Peter J. Hermanson, Candice N. Hirsch

This study identifies compositional and morphological traits of maize kernels that predict pericarp retention during nixtamalization using stain-based scoring and correlation analysis.

Cereal Chemistry · Jun 18, 2026Peer-reviewedPlant Biology

Genomic insights and breeding strategies for nixtamalization moisture content in hybrid maize

Michael J. Burns, Sydney P. Berry, Molly Loftus, Amanda M. Gilbert, Candice N. Hirsch

This study shows nixtamalization moisture content can be selected early in maize breeding using genomic prediction and NIR spectroscopy, with no significant correlation to yield.

bioRxiv · Apr 23, 2025 · PreprintPlant Biology

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

Matthew B. Hufford, Arun Somwarpet Seetharam, Margaret Roth Woodhouse, Kapeel M. Chougule, Shujun Ou, Jianing Liu, William A. Ricci, Tingting Guo, Andrew J. Olson, Yinjie Qiu, Rafael Della Coletta, Silas B. Tittes, Asher I. Hudson, Alexandre P. Marand, Sharon Wei, , R. Kelly Dawe

A multi-genome analysis of maize reveals previously unknown variation in gene content, genome structure, and methylation.

Science · Aug 5, 2021Peer-reviewedGenomics

Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358

Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun Somwarpet Seetharam, Joshua C. Stein, Víctor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin A. Fengler, , Doreen Ware

This study evaluates the impact of sequence depth and read length on long-read assembly quality for the maize genome, finding that lower depths and shorter reads result in fragmented assemblies.

Nature Communications · May 8, 2020Peer-reviewedGenomics