Author

Amelia K. Schmidt

University of Montana

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Organism:human· 1

Frequent Co-Authors

Patrick R. SecoriD· 3 shared Aditi GuptaiD· 1 shared Alex C. Joyce· 1 shared Andrew Maciver· 1 shared Annika Dankwardt· 1 shared Arya KhosraviiD· 1 shared Blake WiedenheftiD· 1 shared Breck A. DuerkopiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersMicrobiology

Patrick R. SecorORCID

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Author profile →

3 papers

Recent·Most cited

A prophage-encoded sRNA limits lytic phage infection of adherent-invasive E. coli

Robert S. Brzozowski, Amelia K. Schmidt, Nicole L. Pershing, Annika Dankwardt, Dominick R. Faith, Alex C. Joyce, Andrew Maciver, William S. Henriques, Shelby E. Andersen, Blake Wiedenheft, Sherwood Casjens, Breck A. Duerkop, June L. Round, Patrick R. Secor

The paper identifies a prophage-encoded sRNA, svsR, that reduces lytic phage infection in AIEC by repressing maltodextrin transport genes, thereby limiting phage receptor expression.

bioRxiv · May 6, 2025 · PreprintMicrobiology

Pseudomonas superinfection drives Pf phage transmission within airway infections in patients with cystic fibrosis

Julie D. Pourtois, Naomi L. Haddock, Aditi Gupta, Arya Khosravi, Hunter A. Martinez, Amelia K. Schmidt, Prema S. Prakash, Ronit Jain, Piper Fleming, Tony Hong Wei Chang, Carlos E. Milla, Patrick R. Secor, Giulio A. De Leo, Paul L. Bollyky, Elizabeth B. Burgener

The paper investigates Pf phage transmission in Pseudomonas aeruginosa airway infections in cystic fibrosis patients, finding vertical transmission within lineages and new superinfections by Pf+ strains.

bioRxiv · Jan 14, 2025 · PreprintMicrobiology

VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes

Conner Copeland, Jack W. Roddy, Amelia K. Schmidt, Patrick R. Secor, Travis J. Wheeler

VIBES automates prophage annotation in bacterial genomes and provides visualization tools, demonstrating its utility across 1,072 Pseudomonas genomes.

NAR Genomics and Bioinformatics · Mar 19, 2024Peer-reviewedBioinformatics