Author

Andrej Hartnett

10X Genomics (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Aleksander S. PopeliD· 1 shared Alexander T.F. BelliD· 1 shared Alexander V. FavoroviD· 1 shared Ashley L. KiemeniD· 1 shared Atul M. DeshpandeiD· 1 shared Cedric R. UytingcoiD· 1 shared Cesar Augusto Santa-MariaiD· 1 shared Daniele M. GilkesiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Aleksander S. PopelORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Atul M. Deshpande, Melanie Loth, Dimitrios N. Sidiropoulos, Shuming Zhang, Long Yuan, Alexander T.F. Bell, Qingfeng Zhu, Won Jin Ho, Cesar Augusto Santa-Maria, Daniele M. Gilkes, Stephen R. Williams, Cedric R. Uytingco, Jennifer G. Chew, Andrej Hartnett, Zachary Bent, , Elana Judith Fertig

This paper introduces SpaceMarkers, a method to infer molecular changes from cell-cell interactions in spatial transcriptomics data, applied to tumor-immune interactions in metastasis and immunotherapy.

Cell Systems · Apr 1, 2023Peer-reviewedBioinformatics