Author

Margaret Tsui

University of California, San FranciscoORCID 0000-0002-1503-8795Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Arda Demirci· 1 shared Brendan Lapointe RaizenneiD· 1 shared Bruce WangiD· 1 shared Catriona Y. LoganiD· 1 shared Christopher M. HeaphyiD· 1 shared Ezequiel Goldschmidt· 1 shared Franklin W. HuangiD· 1 shared Hanbing SongiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Arda Demirci

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2 papers

Recent·Most cited

A single-cell and spatial atlas of prostate cancer reveals the combinatorial nature of gene modules underlying lineage plasticity and metastasis

Hanbing Song, Junxiang Xu, Keila Velázquez-Arcelay, Arda Demirci, Brendan Lapointe Raizenne, Sarah C. Hsu, Joshua Choi, Julia H. Pham, Yih-An Chen, Hannah N. W. Weinstein, Isaac Salzman, Margaret Tsui, Jon Akutagawa, Wisdom Adingo, Ezequiel Goldschmidt, , Franklin W. Huang

The paper constructs a single-cell and spatial atlas of prostate cancer to reveal gene modules driving lineage plasticity and metastasis, identifying new biological insights and a transformer-based model for cell-state classification.

bioRxiv · Mar 27, 2026 · PreprintGenomics

Tissue repair in the mouse liver following acute carbon tetrachloride depends on injury-induced Wnt/β-catenin signaling

Ludan Zhao, Yinhua Jin, Katie Donahue, Margaret Tsui, Matt Fish, Catriona Y. Logan, Bruce Wang, Roeland Nusse

This study shows that Wnt/β-catenin signaling, driven by endothelial cells, is critical for liver repair after acute carbon tetrachloride injury.

Hepatology · Feb 14, 2019Peer-reviewedDevelopmental Biology