Edward Catoiu

QSProteome: A Community-Driven Interactive Platform for Large-Scale Exploration and Evaluation of Predicted Protein Complex Structures.

QSProteome provides a platform for modeling, evaluating, and refining predicted protein complex structures, enabling community-driven exploration and refinement of over 42,000 genes.

Laboratory evolution reveals transcriptional mechanisms underlying thermal adaptation of Escherichia coli

This study uses adaptive laboratory evolution to identify five transcriptional mechanisms enabling Escherichia coli to grow at high temperatures.

Establishing comprehensive quaternary structural proteomes from genome sequence

The paper develops QSPACE, a computational platform to annotate quaternary structural proteomes at genome-scale using structural resources and mutation data, demonstrating its application on E. coli.

COBRAme: A Computational Framework for Models of Metabolism and Gene Expression

COBRAme is a software framework for building and simulating ME-models, enabling efficient reconstruction and analysis of genome-scale models of metabolism and gene expression.

ssbio: A Python Framework for Structural Systems Biology

The paper introduces ssbio, a Python framework for integrating structural biology data into genome-scale systems biology workflows.